| METHOD about: | ../../../doc/explain_methods.html#PX_about_psipred |
| METHOD url: | PSIpred |
| TYPE : | sec |
| NPROT : | 224 |
| NWEEKS : | 68 |
| NOTE 1 : | here ALL results obtained for PSIpred in month 2005_04 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2005_04 | dssp | ALL_proteins:psum | 77.8 | 86 | 82 | 66 | 74 | 75 | 75 | 75.3 | 81.1 | 72.5 | 70.3 | 2.5 | 0.38 | 0.37 | 0.38 | 0.71 | 0.64 | 0.59 | 8616.0 | 7.9 | 5.5 |
| sec | 2005_04 | dssp | ALL_proteins:sig | 11.3 | 35 | 33 | 46 | 51 | 15 | 14 | 16.4 | 23.3 | 32.6 | 18.2 | 4.5 | 0.18 | 0.19 | 0.19 | 0.22 | 0.29 | 0.20 | 8549.0 | 9.1 | 7.4 |
| sec | 2005_04 | dssp | ALL_proteins:errsig | 0.75 | 2 | 2 | 3 | 3 | 1 | 0.98 | 1.1 | 1.5 | 2.1 | 1.2 | 0.30 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 571.2 | 0.60 | 0.49 |
| sec | 2005_04 | dssp | THIS_month:psum | 79.8 | 70 | 66 | 29 | 34 | 80 | 76 | 72.9 | 71.6 | 77.6 | 75.1 | 3.6 | 0.38 | 0.38 | 0.38 | 0.74 | 0.80 | 0.62 | 90.9 | 7.4 | 5.6 |
| sec | 2005_04 | dssp | 1szl:A | 65.6 | 0 | 0 | 0 | 0 | 86 | 88 | 60.5 | 100 | 0 | 80 | 16.3 | 0.22 | 0.23 | 0.22 | 1.0 | 1.0 | 0.52 | 100.0 | 26.0 | 24.0 |
| sec | 2005_04 | dssp | 1v1c:A | 66.2 | 66 | 40 | 53 | 66 | 77 | 69 | 60.6 | 50 | 53 | 67 | 4.4 | 0.18 | 0.19 | 0.18 | 0.48 | 0.33 | 0.41 | 100.0 | 2.0 | 8.0 |
| sec | 2005_04 | dssp | 1y74:A | 89.5 | 89 | 97 | 0 | 0 | 87 | 58 | 82.6 | 83 | 100 | 79 | 0.0 | 0.39 | 0.44 | 0.35 | 0.65 | 1.0 | 0.65 | 100.0 | 7.0 | 0.00 |
| sec | 2005_04 | dssp | 1y74:B | 96.0 | 97 | 97 | 0 | 0 | 88 | 88 | 84.5 | 83 | 100 | 88 | 0.0 | 0.66 | 0.67 | 0.67 | 0.86 | 1.0 | 0.86 | 100.0 | 0.00 | 0.00 |
| sec | 2005_04 | dssp | 1y9l:A | 71.8 | 89 | 58 | 60 | 93 | 76 | 66 | 77.6 | 96 | 75 | 72 | 3.6 | 0.35 | 0.36 | 0.35 | 0.65 | 0.63 | 0.50 | 100.0 | 9.0 | 15.0 |
| sec | 2005_04 | dssp | 1ywy:A | 64.9 | 0 | 0 | 72 | 62 | 81 | 66 | 65.8 | 0 | 78 | 79 | 5.4 | 0.15 | 0.12 | 0.18 | 1.0 | 0.48 | 0.41 | 100.0 | 16.0 | 5.0 |
| sec | 2005_04 | dssp | 1z0p:A | 90.4 | 98 | 90 | 0 | 0 | 57 | 88 | 63.9 | 72 | 100 | 43 | 0.0 | 0.40 | 0.35 | 0.46 | 0.66 | 1.0 | 0.66 | 100.0 | 6.0 | 0.00 |
| sec | 2005_04 | dssp | 1z23:A | 90.8 | 93 | 93 | 0 | 0 | 83 | 85 | 81.3 | 84 | 100 | 74 | 0.0 | 0.51 | 0.51 | 0.51 | 0.77 | 1.0 | 0.77 | 100.0 | 0.00 | 0.00 |
| sec | 2005_04 | dssp | 1z2n:X | 78.8 | 77 | 80 | 69 | 82 | 85 | 75 | 73.9 | 73 | 71 | 75 | 4.1 | 0.40 | 0.40 | 0.41 | 0.69 | 0.67 | 0.65 | 0.0 | 1.0 | 4.0 |
| sec | 2005_04 | dssp | 1z3i:X | 77.5 | 87 | 75 | 68 | 81 | 70 | 78 | 77.6 | 85 | 77 | 70 | 1.8 | 0.36 | 0.36 | 0.38 | 0.64 | 0.71 | 0.57 | 100.0 | 6.0 | 2.0 |
| sec | 2005_04 | dssp | 1z61:A | 87.1 | 80 | 97 | 0 | 0 | 96 | 84 | 74.4 | 62 | 100 | 100 | 4.2 | 0.54 | 0.61 | 0.49 | 0.75 | 1.0 | 0.83 | 100.0 | 9.0 | 4.0 |
| sec | 2005_04 | dssp | THIS_month:psum | 79.8 | 70 | 66 | 29 | 34 | 80 | 76 | 72.9 | 71.6 | 77.6 | 75.1 | 3.6 | 0.38 | 0.38 | 0.38 | 0.74 | 0.80 | 0.62 | 90.9 | 7.4 | 5.6 |
| sec | 2005_04 | dssp | ALL_proteins:psum | 77.8 | 86 | 82 | 66 | 74 | 75 | 75 | 75.3 | 81.1 | 72.5 | 70.3 | 2.5 | 0.38 | 0.37 | 0.38 | 0.71 | 0.64 | 0.59 | 8616.0 | 7.9 | 5.5 |
| sec | 2005_04 | dssp | ALL_proteins:sig | 11.3 | 35 | 33 | 46 | 51 | 15 | 14 | 16.4 | 23.3 | 32.6 | 18.2 | 4.5 | 0.18 | 0.19 | 0.19 | 0.22 | 0.29 | 0.20 | 8549.0 | 9.1 | 7.4 |
| sec | 2005_04 | dssp | ALL_proteins:errsig | 0.75 | 2 | 2 | 3 | 3 | 1 | 0.98 | 1.1 | 1.5 | 2.1 | 1.2 | 0.30 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 571.2 | 0.60 | 0.49 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |