| METHOD about: | ../../../doc/explain_methods.html#PX_about_phdpsi |
| METHOD url: | PHDpsi |
| TYPE : | sec |
| NPROT : | 231 |
| NWEEKS : | 70 |
| NOTE 1 : | here ALL results obtained for PHDpsi in month 2004_12 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2004_12 | dssp | ALL_proteins:psum | 74.9 | 81 | 81 | 65 | 64 | 72 | 72 | 71.0 | 77.2 | 72.3 | 66.8 | 3.8 | 0.34 | 0.35 | 0.34 | 0.67 | 0.56 | 0.54 | 8225.1 | 8.5 | 6.8 |
| sec | 2004_12 | dssp | ALL_proteins:sig | 11.6 | 33 | 33 | 44 | 44 | 18 | 16 | 16.9 | 24.8 | 30.5 | 20.0 | 7.0 | 0.17 | 0.19 | 0.18 | 0.24 | 0.32 | 0.20 | 8160.6 | 9.2 | 9.3 |
| sec | 2004_12 | dssp | ALL_proteins:errsig | 0.76 | 2 | 2 | 2 | 2 | 1 | 1 | 1.1 | 1.6 | 2.0 | 1.3 | 0.46 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 536.9 | 0.61 | 0.61 |
| sec | 2004_12 | dssp | THIS_month:psum | 85.4 | 88 | 98 | 75 | 66 | 81 | 66 | 77.1 | 73 | 80 | 90 | 0 | 0.53 | 0.56 | 0.52 | 0.81 | 0.67 | 0.64 | 100 | 6 | 1 |
| sec | 2004_12 | dssp | 1y0u:A | 85.4 | 88 | 98 | 75 | 66 | 81 | 66 | 77.1 | 73 | 80 | 90 | 0.0 | 0.53 | 0.56 | 0.52 | 0.81 | 0.67 | 0.64 | 100.0 | 6.0 | 1.0 |
| sec | 2004_12 | dssp | THIS_month:psum | 85.4 | 88 | 98 | 75 | 66 | 81 | 66 | 77.1 | 73 | 80 | 90 | 0 | 0.53 | 0.56 | 0.52 | 0.81 | 0.67 | 0.64 | 100 | 6 | 1 |
| sec | 2004_12 | dssp | ALL_proteins:psum | 74.9 | 81 | 81 | 65 | 64 | 72 | 72 | 71.0 | 77.2 | 72.3 | 66.8 | 3.8 | 0.34 | 0.35 | 0.34 | 0.67 | 0.56 | 0.54 | 8225.1 | 8.5 | 6.8 |
| sec | 2004_12 | dssp | ALL_proteins:sig | 11.6 | 33 | 33 | 44 | 44 | 18 | 16 | 16.9 | 24.8 | 30.5 | 20.0 | 7.0 | 0.17 | 0.19 | 0.18 | 0.24 | 0.32 | 0.20 | 8160.6 | 9.2 | 9.3 |
| sec | 2004_12 | dssp | ALL_proteins:errsig | 0.76 | 2 | 2 | 2 | 2 | 1 | 1 | 1.1 | 1.6 | 2.0 | 1.3 | 0.46 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 536.9 | 0.61 | 0.61 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |