| METHOD about: | ../../../doc/explain_methods.html#PX_about_prospect |
| METHOD url: | Prospect |
| TYPE : | sec |
| NPROT : | 94 |
| NWEEKS : | 33 |
| NOTE 1 : | here ALL results obtained for Prospect in month 2004_09 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2004_09 | dssp | ALL_proteins:psum | 71.4 | 75 | 80 | 63 | 65 | 75 | 70 | 68.9 | 75.3 | 71.3 | 66.7 | 4.7 | 0.32 | 0.33 | 0.31 | 0.63 | 0.56 | 0.53 | 8297.8 | 11.1 | 8.9 |
| sec | 2004_09 | dssp | ALL_proteins:sig | 14.3 | 35 | 36 | 44 | 46 | 15 | 18 | 19.7 | 28.7 | 32.0 | 19.3 | 9.0 | 0.18 | 0.18 | 0.18 | 0.30 | 0.33 | 0.23 | 8259.0 | 13.5 | 10.8 |
| sec | 2004_09 | dssp | ALL_proteins:errsig | 1.4 | 3 | 3 | 4 | 4 | 1 | 1 | 2.0 | 2.9 | 3.3 | 2.0 | 0.93 | 0.01 | 0.01 | 0.01 | 0.03 | 0.03 | 0.02 | 851.8 | 1.4 | 1.1 |
| sec | 2004_09 | dssp | THIS_month:psum | 72.6 | 67 | 71 | 44 | 32 | 73 | 82 | 73.1 | 90.4 | 70.2 | 70.7 | 3.6 | 0.34 | 0.35 | 0.34 | 0.73 | 0.60 | 0.53 | 85.7 | 10 | 6.5 |
| sec | 2004_09 | dssp | 1r02:A | 66.7 | 66 | 66 | 0 | 0 | 66 | 75 | 65.0 | 93 | 100 | 51 | 3.0 | 0.11 | 0.12 | 0.10 | 0.38 | 1.0 | 0.39 | 100.0 | 0.00 | 6.0 |
| sec | 2004_09 | dssp | 1rmk:A | 38.7 | 0 | 0 | 0 | 0 | 48 | 80 | 24.5 | 100 | 0 | 27 | 9.6 | 0.02 | 0.03 | 0.02 | 1.0 | -0.12 | -0.01 | 100.0 | 45.0 | 12.0 |
| sec | 2004_09 | dssp | 1srk:A | 80.0 | 63 | 100 | 75 | 42 | 90 | 85 | 94.3 | 90 | 75 | 100 | 5.7 | 0.44 | 0.45 | 0.44 | 0.73 | 0.49 | 0.70 | 100.0 | 11.0 | 8.0 |
| sec | 2004_09 | dssp | 1u5t:C | 76.4 | 78 | 78 | 100 | 43 | 71 | 87 | 70.8 | 80 | 66 | 66 | 2.2 | 0.37 | 0.40 | 0.35 | 0.66 | 0.62 | 0.58 | 100.0 | 0.00 | 10.0 |
| sec | 2004_09 | dssp | 1vd2:A | 92.1 | 100 | 96 | 96 | 83 | 84 | 97 | 98.9 | 100 | 98 | 98 | 0.0 | 0.76 | 0.77 | 0.76 | 0.97 | 0.84 | 0.84 | 100.0 | 1.0 | 4.0 |
| sec | 2004_09 | dssp | 1w2c:A | 69.8 | 73 | 83 | 43 | 62 | 81 | 62 | 64.8 | 70 | 53 | 65 | 4.9 | 0.28 | 0.27 | 0.29 | 0.64 | 0.41 | 0.50 | 0.0 | 4.0 | 6.0 |
| sec | 2004_09 | dssp | 1xc0:A | 84.8 | 93 | 77 | 0 | 0 | 77 | 93 | 93.9 | 100 | 100 | 88 | 0.0 | 0.41 | 0.42 | 0.42 | 0.71 | 1.0 | 0.71 | 100.0 | 9.0 | 0.00 |
| sec | 2004_09 | dssp | THIS_month:psum | 72.6 | 67 | 71 | 44 | 32 | 73 | 82 | 73.1 | 90.4 | 70.2 | 70.7 | 3.6 | 0.34 | 0.35 | 0.34 | 0.73 | 0.60 | 0.53 | 85.7 | 10 | 6.5 |
| sec | 2004_09 | dssp | ALL_proteins:psum | 71.4 | 75 | 80 | 63 | 65 | 75 | 70 | 68.9 | 75.3 | 71.3 | 66.7 | 4.7 | 0.32 | 0.33 | 0.31 | 0.63 | 0.56 | 0.53 | 8297.8 | 11.1 | 8.9 |
| sec | 2004_09 | dssp | ALL_proteins:sig | 14.3 | 35 | 36 | 44 | 46 | 15 | 18 | 19.7 | 28.7 | 32.0 | 19.3 | 9.0 | 0.18 | 0.18 | 0.18 | 0.30 | 0.33 | 0.23 | 8259.0 | 13.5 | 10.8 |
| sec | 2004_09 | dssp | ALL_proteins:errsig | 1.4 | 3 | 3 | 4 | 4 | 1 | 1 | 2.0 | 2.9 | 3.3 | 2.0 | 0.93 | 0.01 | 0.01 | 0.01 | 0.03 | 0.03 | 0.02 | 851.8 | 1.4 | 1.1 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |