| METHOD about: | ../../../doc/explain_methods.html#PX_about_psiblast |
| METHOD url: | PSI-BLAST |
| TYPE : | fr |
| NPROT : | 839 |
| NWEEKS : | 359 |
| NOTE 1 : | here ALL results obtained for PSI-BLAST in month 2004_10 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | Target | -lnP_MMT | Z_CE | Q_LG1 | Q_LG2 | N3.5A_Gbl% | N5A_Gbl% | ModN% | ServScore | N3.5A_ext_CE% | N5A_ext_CE% | TgtN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fr | 2006_11_16 | psum | 2.9 | 2.3 | 2.3 | 2.9 | 15.0 | 20.2 | 49.7 | 14.2 | 26.2 | 29.5 | 136.5 |
| fr | 2004_10 | THIS_month:psum | 2.1 | 2.1 | 30.6 | 12.0 | 16.7 | 20.5 | 49.6 | 3.7 | 25.4 | 27.7 | 109.0 |
| fr | 2004_10 | 1r5s:A | 1.2 | 1.6 | -1.489661e+01 | -3.767578e+00 | 3.0e+00 | 5.3e+00 | 3.1e+01 | 4.8 | 1.5e+01 | 1.6e+01 | 132 |
| fr | 2004_10 | 1u5k:A | 2.9 | 3.5 | -1.327749e+01 | -1.243211e+00 | 9.5e+00 | 9.9e+00 | 1.9e+01 | 0.43 | 9.1e+00 | 9.9e+00 | 242 |
| fr | 2004_10 | 1u5m:A | 1.0 | 1.2 | -1.745143e+01 | -7.979635e+00 | 8.2e+00 | 1.4e+01 | 4.8e+01 | 6.0 | 1.8e+01 | 1.5e+01 | 73 |
| fr | 2004_10 | 1u84:A | 1.6 | 2.6 | -9.138810e+00 | 5.784423e+00 | 7.4e+00 | 1.2e+01 | 8.1e+01 | 0.21 | 3.6e+01 | 4.0e+01 | 81 |
| fr | 2004_10 | 1u96:A | 0.8 | 0.7 | -1.180798e+01 | -4.409875e+00 | 1.4e+00 | 5.8e+00 | 7.4e+01 | 1.1 | 2.8e+01 | 3.0e+01 | 69 |
| fr | 2004_10 | 1ujr:A | 0.9 | 2.0 | -3.174606e+00 | -2.999181e+00 | 1.8e+00 | 1.0e+01 | 3.9e+01 | 2.9 | 1.4e+01 | 1.7e+01 | 110 |
| fr | 2004_10 | 1vd4:A | 3.6 | 2.0 | -1.357333e+01 | -2.731772e+00 | 2.9e+01 | 3.7e+01 | 7.3e+01 | 0.14 | 2.6e+01 | 4.0e+01 | 62 |
| fr | 2004_10 | 1wmt:A | 5.2 | 4.1 | 3.499555e+01 | 2.890448e+01 | 8.8e+01 | 8.8e+01 | 8.8e+01 | 0.62 | 8.8e+01 | 8.8e+01 | 41 |
| fr | 2004_10 | 1x9z:A | 2.4 | 2.8 | -2.181429e+01 | 1.077341e+00 | 6.1e+00 | 8.9e+00 | 1.6e+01 | 10 | 1.3e+01 | 1.3e+01 | 180 |
| fr | 2004_10 | 1xi7:A | 1.4 | 1.6 | -1.970323e+01 | -1.299507e+01 | 3.6e+01 | 3.6e+01 | 6.6e+01 | 18 | 3.6e+01 | 3.6e+01 | 47 |
| fr | 2004_10 | 1xjh:A | 1.2 | 2.3 | -2.776364e+01 | -9.821896e+00 | 2.3e+01 | 2.9e+01 | 3.5e+01 | 3.9 | 2.4e+01 | 2.4e+01 | 62 |
| fr | 2004_10 | 1xo3:A | 1.8 | 1.2 | -3.740632e+00 | -2.955240e+00 | 4.0e+00 | 1.2e+01 | 5.5e+01 | 1.1 | 1.8e+01 | 2.2e+01 | 101 |
| fr | 2004_10 | 1xo8:A | 2.2 | 2.3 | -1.327737e+01 | -1.736893e+00 | 3.3e+00 | 4.0e+00 | 3.0e+01 | 4.2 | 1.1e+01 | 1.6e+01 | 151 |
| fr | 2004_10 | 1xoy:A | 1.9 | 2.8 | -1.071579e+01 | -3.305469e+00 | 4.3e+00 | 9.3e+00 | 3.5e+01 | 0.35 | 1.2e+01 | 1.4e+01 | 161 |
| fr | 2004_10 | 1xpj:A | 4.7 | 1.6 | 2.638260e+01 | 1.260152e+01 | 2.6e+01 | 2.7e+01 | 5.5e+01 | 2.3 | 3.4e+01 | 3.5e+01 | 124 |
| fr | 2004_10 | THIS_month:psum | 2.1 | 2.1 | 30.6 | 12.0 | 16.7 | 20.5 | 49.6 | 3.7 | 25.4 | 27.7 | 109.0 |
| fr | 2006_11_16 | psum | 2.9 | 2.3 | 2.3 | 2.9 | 15.0 | 20.2 | 49.7 | 14.2 | 26.2 | 29.5 | 136.5 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |