| METHOD about: | ../../../doc/explain_methods.html#PX_about_psiblast |
| METHOD url: | PSI-BLAST |
| TYPE : | fr |
| NPROT : | 839 |
| NWEEKS : | 359 |
| NOTE 1 : | here ALL results obtained for PSI-BLAST in month 2004_06 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | Target | -lnP_MMT | Z_CE | Q_LG1 | Q_LG2 | N3.5A_Gbl% | N5A_Gbl% | ModN% | ServScore | N3.5A_ext_CE% | N5A_ext_CE% | TgtN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fr | 2006_11_16 | psum | 2.9 | 2.3 | 2.3 | 2.9 | 15.0 | 20.2 | 49.7 | 14.2 | 26.2 | 29.5 | 136.5 |
| fr | 2004_06 | THIS_month:psum | 2.3 | 2.3 | 28.6 | 2.9 | 14.2 | 21.7 | 52.3 | 14.4 | 26.4 | 29.3 | 89.2 |
| fr | 2004_06 | 1pfj:A | 2.8 | 1.2 | -1.064158e+01 | 4.537702e-01 | 1.9e+00 | 7.4e+00 | 5.1e+01 | 7.2 | 1.8e+01 | 2.0e+01 | 108 |
| fr | 2004_06 | 1pxq:A | 0.2 | 1.2 | -2.655652e+01 | -1.745143e+01 | 8.6e+00 | 2.3e+01 | 6.6e+01 | 41 | 4.0e+01 | 4.3e+01 | 35 |
| fr | 2004_06 | 1rfx:A | 1.4 | 2.6 | -3.592941e+01 | -6.862921e+00 | 1.9e+01 | 1.9e+01 | 1.9e+01 | 5.6 | 1.9e+01 | 1.9e+01 | 89 |
| fr | 2004_06 | 1rzs:A | 1.5 | 2.6 | -1.065781e+01 | -5.463214e+00 | 6.6e+00 | 1.5e+01 | 8.4e+01 | 22 | 2.6e+01 | 3.1e+01 | 61 |
| fr | 2004_06 | 1s4k:A | 4.2 | 2.8 | -1.017795e+01 | -1.761652e+00 | 4.3e+00 | 1.0e+01 | 5.2e+01 | 2.5 | 1.7e+01 | 1.8e+01 | 115 |
| fr | 2004_06 | 1s6d:A | 3.3 | 3.3 | 2.860259e+01 | -1.321240e+00 | 2.5e+01 | 2.6e+01 | 3.4e+01 | 0.09 | 2.4e+01 | 2.8e+01 | 103 |
| fr | 2004_06 | 1sr4:C | 3.7 | 2.6 | -1.420465e+01 | 2.012825e+00 | 1.7e+01 | 1.8e+01 | 2.8e+01 | 0.60 | 1.8e+01 | 1.8e+01 | 154 |
| fr | 2004_06 | 1ssz:A | 3.4 | 2.3 | -2.106207e+01 | -1.582243e+01 | 4.4e+01 | 6.2e+01 | 8.5e+01 | 72 | 5.3e+01 | 6.2e+01 | 34 |
| fr | 2004_06 | 1tlu:A | 1.2 | 2.0 | -7.992656e+00 | -4.293331e+00 | 1.0e+01 | 1.3e+01 | 6.5e+01 | 3.8 | 2.1e+01 | 2.5e+01 | 117 |
| fr | 2004_06 | 1v65:A | 0.8 | 1.6 | -1.696667e+01 | -8.981083e+00 | 7.8e+00 | 1.9e+01 | 5.6e+01 | 1.2 | 2.8e+01 | 3.0e+01 | 64 |
| fr | 2004_06 | 1w0b:A | 3.0 | 3.3 | -5.380058e+00 | 6.236742e+00 | 1.2e+01 | 2.7e+01 | 3.6e+01 | 2.9 | 2.7e+01 | 2.9e+01 | 102 |
| fr | 2004_06 | THIS_month:psum | 2.3 | 2.3 | 28.6 | 2.9 | 14.2 | 21.7 | 52.3 | 14.4 | 26.4 | 29.3 | 89.2 |
| fr | 2006_11_16 | psum | 2.9 | 2.3 | 2.3 | 2.9 | 15.0 | 20.2 | 49.7 | 14.2 | 26.2 | 29.5 | 136.5 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |