| METHOD about: | ../../../doc/explain_methods.html#PX_about_psiblast |
| METHOD url: | PSI-BLAST |
| TYPE : | fr |
| NPROT : | 839 |
| NWEEKS : | 359 |
| NOTE 1 : | here ALL results obtained for PSI-BLAST in month 2004_03 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | Target | -lnP_MMT | Z_CE | Q_LG1 | Q_LG2 | N3.5A_Gbl% | N5A_Gbl% | ModN% | ServScore | N3.5A_ext_CE% | N5A_ext_CE% | TgtN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fr | 2006_11_16 | psum | 2.9 | 2.3 | 2.3 | 2.9 | 15.0 | 20.2 | 49.7 | 14.2 | 26.2 | 29.5 | 136.5 |
| fr | 2004_03 | THIS_month:psum | 3.0 | 2.5 | 24.0 | 16.4 | 27.5 | 32.0 | 54.6 | 11.0 | 38.0 | 40.8 | 85.2 |
| fr | 2004_03 | 1oyi:A | 5.7 | 3.9 | -1.286507e+01 | 1.546017e+01 | 6.1e+01 | 6.3e+01 | 6.3e+01 | 9.3 | 6.1e+01 | 6.3e+01 | 62 |
| fr | 2004_03 | 1pgy:A | 1.3 | 2.3 | -1.607368e+01 | -1.172837e+01 | 1.1e+01 | 2.1e+01 | 8.1e+01 | 2.1 | 2.8e+01 | 3.4e+01 | 47 |
| fr | 2004_03 | 1pjv:A | 3.7 | 3.5 | 2.786473e+01 | 2.313685e+01 | 8.4e+01 | 8.8e+01 | 8.8e+01 | 12 | 8.4e+01 | 8.8e+01 | 32 |
| fr | 2004_03 | 1q2f:A | 2.7 | 2.3 | -1.230124e+01 | -1.128033e+01 | 6.6e+01 | 7.2e+01 | 7.2e+01 | 15 | 5.0e+01 | 5.3e+01 | 32 |
| fr | 2004_03 | 1q8b:A | 2.2 | 2.3 | -1.696667e+01 | -3.011577e+00 | 1.5e+01 | 1.9e+01 | 4.0e+01 | 1.8 | 2.5e+01 | 2.6e+01 | 89 |
| fr | 2004_03 | 1qw2:A | 3.1 | 2.8 | -2.443200e+01 | -6.159362e+00 | 2.6e+01 | 2.6e+01 | 2.6e+01 | 0.27 | 2.6e+01 | 2.6e+01 | 97 |
| fr | 2004_03 | 1r4g:A | 1.6 | 2.8 | -3.393333e+01 | -1.152453e+01 | 3.4e+01 | 3.4e+01 | 3.4e+01 | 43 | 3.4e+01 | 3.4e+01 | 53 |
| fr | 2004_03 | 1r4v:A | 8.0 | 4.1 | -9.975878e+00 | 7.771346e+00 | 3.2e+01 | 3.8e+01 | 4.0e+01 | 0.06 | 3.4e+01 | 3.4e+01 | 145 |
| fr | 2004_03 | 1rkl:A | 0.6 | 1.6 | -3.054000e+01 | -1.695070e+01 | 1.7e+01 | 2.5e+01 | 5.6e+01 | 53 | 4.4e+01 | 4.7e+01 | 36 |
| fr | 2004_03 | 1rqt:A | 4.8 | 4.1 | 4.108936e+01 | 3.553674e+01 | 8.4e+01 | 8.6e+01 | 9.5e+01 | 1.2 | 8.4e+01 | 8.6e+01 | 37 |
| fr | 2004_03 | 1s4z:C | 1.1 | 2.3 | -2.181429e+01 | -2.031363e+01 | 1.0e+01 | 2.3e+01 | 9.3e+01 | 22 | 4.3e+01 | 5.3e+01 | 30 |
| fr | 2004_03 | 1ul7:A | 3.7 | 2.8 | -1.850909e+01 | 3.069128e+00 | 0.0e+00 | 2.9e+00 | 3.2e+01 | 1.0 | 2.7e+01 | 2.9e+01 | 102 |
| fr | 2004_03 | 1ut4:A | 0.7 | 0.0 | -1.327817e+01 | -3.025855e+00 | 2.7e+00 | 6.2e+00 | 3.2e+01 | 11 | 1.2e+01 | 1.4e+01 | 146 |
| fr | 2004_03 | 1uw1:A | 0.7 | 1.6 | -1.299574e+01 | -4.457429e+00 | 3.0e+00 | 3.0e+00 | 7.0e+01 | 2.5 | 3.1e+01 | 3.6e+01 | 67 |
| fr | 2004_03 | 1uw4:B | 2.1 | 2.6 | -1.745143e+01 | -2.325685e+00 | 5.2e+00 | 6.0e+00 | 1.4e+01 | 21 | 7.3e+00 | 7.7e+00 | 248 |
| fr | 2004_03 | 1v74:A | 1.5 | 1.2 | -9.851613e+00 | -4.004793e+00 | 9.3e-01 | 1.9e+00 | 5.8e+01 | 1.7 | 2.1e+01 | 2.8e+01 | 107 |
| fr | 2004_03 | 1v74:B | 0.4 | 0.7 | -2.776364e+01 | -6.911488e+00 | 2.3e+00 | 9.2e+00 | 2.5e+01 | 2.4 | 1.4e+01 | 1.7e+01 | 87 |
| fr | 2004_03 | 1vjh:A | 11.5 | 4.1 | 3.168132e+00 | 1.397158e+01 | 4.1e+01 | 5.2e+01 | 6.4e+01 | 0.08 | 6.0e+01 | 6.0e+01 | 118 |
| fr | 2004_03 | THIS_month:psum | 3.0 | 2.5 | 24.0 | 16.4 | 27.5 | 32.0 | 54.6 | 11.0 | 38.0 | 40.8 | 85.2 |
| fr | 2006_11_16 | psum | 2.9 | 2.3 | 2.3 | 2.9 | 15.0 | 20.2 | 49.7 | 14.2 | 26.2 | 29.5 | 136.5 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |